Saturday 10 May 2008

Genetic abbreviations

aaat
aak
aat;alpha-1 anti-trypsin
aba;abscisic acid
abca
abi
abl
ablim
acadl
acadm
acavl
accn
acH
achr;acetylcholine receptor
acj
acl;atp-citrate lycase
ACOT;acyl-coa thioesterase
acs2p
acsl
act;actin
acta2;a2-actin
actn;actinin
adamts
adfp;adipocyte differentation-related protein
ADH;alcohol dehyrogenase enzymes
adrp;adipocyte differentation-related protein
aep
ago;argonaute
ahr;aryl hydrocarbon receptor
aicd;app intracellular domain
aid;acivation-induced deaminase
aim
aipm;azaindolyl-pyrazinyl-maleimide
akt
ala
alas;aminolevulinic acid synthase
alb
alda-1
alai
aldh2;aldehyde dehydrogenase 2
alg
alk;anaplastic lymphoma kinase
alt;alanine aminotransferase
alu
ampa
ampk
amt
amy;amylase
anb
angpt;angiopoietin
anxa
ap;adaptor protein
apba;amyloid B A4 precursor protein-binding,family a
apc ;anaphase-promoting complex?/aenomarous plyposis coli/apythical protein kinase
apc/c;anaphase-promoting complex/cyclosome
aph
aplb
apoa
apobec;apolipoprotein B eiing complex proein
APOE
app;amyloid precursor protein
ap*s
aqp
ar;androgen receptor
araC
arc
ARF;adenosine diphosphate ribosylation factor
arg;arginine
arhgef7
asc
asf;ant-silencing unction
ash
asic
ASIP;agouti signaling protein
asn
asp
aspm
ast
ASXL
atf;activating transcription factor
atl;alkyltranserase-like protein
atm
atoh
atp;adenosine triphosphate
atr6v
avpr;arginine vasopressin
BAC;bacterial artificial chromosome
bach
bak
batp
bax
bbc
bcan
bcap;b cell adaptor protein
bcar
bcl
bcr;b cell receptors
bcr-abl1;B-cell recepor?
bdf
Bdnf;brain-derived neuorotrophic factor
becn;beclin
betp
bh
bhlh;;basic-helix-loop-helix
bid
bim
blimp
BMP;bone morphogenetic proteins
bmpr;ditto + recepttor
bolle
boule
bpi
braf
brap
BRCA
brct
brdU;bromodeoxyuridine
brn3
bs;blistered
btd; b tail domain
bubr;budding uninhibited by benzimidazoles-related
by
bzip;basic-region leucine zipper
b2m;b*-microgloin
b3gbt1
ca;chromatin assembly factor/cis-aconitate
caaatt
cacnp
caga
calcr;calcitonin receptor
caloco
camk;calcium/calmodulin-dependent kinase
camta;calmodulin-binding transcription activator
caps;capricious
card;caspase recruitment domain-containing protein
carm;coativator-associated arginine methyltranferase
cat
cathl;cathelicidin
cbl
cblb
cbp;CREB-binding protein
cbx
cc;coiled coil
cca;circadian clock associated/citrate or cis-aconitate
ccl;ccr3 ligands eotaxin
ccr;cell chemokine receptor?
cdc2;cdk protein complex?
CDK;cyclin-dependent kinase
CDKN;
cdk*rap
cd247
cd3e
ct
ceacam
cebpa ;ccaat/enhancer binding protein alpha
cebpg
cenpj
cep
cesa
cet*p
cftr;cystic fibrosis transmembrane regulator
ctr
chc;clathrin?
che;cca1 hiking expedition
chek
chrebp;carbohydrate responsive element-building protein
chk
chop
chr;channelrhodopsin
chx
cidea
cis;common insrion sites
cit
ck;casein kinase
clb
CLE4A
clib
clk
cln;syclin?
cmy;chromomethylase
cnih
cnp
cnt
CNV;copy number variation
col9a1
COMT;catechol-o-methyltransferase
cop
CORO1B
cox
cpt
creb;cyclic
crebp;camp responce element-binding protein
crhr;corticotropin-releasing hormone receptor
CRISPR;clutered regularly interspaced short palindromic repeats
crk
crkl
cry;cryptochrome
csf;colony stimulating factor
csk
cslb
cslf
cslg
cslh
csn
csnk 2A1
csp;cystein string protein
ctcf
CTLA; Cytoxic T-lymphocyte antigen
cue
cx;connexin
cxcl
cyc
cyp;cytochrome p450
cys
c3po;component 3 promoter of risc
daacs;dicarboxylate/amino-acid:cation symporter
dab
dach
daf
dag;diacylglycerol
DAO
dap
dapi;diamidino-2-phenylindole
DARC;Duffy antigen for receptor chemokine
dat
dbd;DDN
daz
dazl
A binding domain
dbc
DBP;duffy binding-protein
scakd
dcl;Dicer-like
dcn
dctn;dynactin
ddcad
ddef
ddx
dit
ddm;desreased dna methylaion
dec
dep
dgk;diacylglycerol kinase
dgkb
dhh
dhr;dock honology region
dhx
dicer
dio
disc;disrupted in schizophrenia
dll;distal-less
dlx
dmdg
dmrt;doublesex and mab-3-related transcripion factor
DNA;
dnah
dock
dppa
dr;death receptor/dopamine receptor
dram
DRD
drm;domains rearranged methyltranserase
drp;dtnamin-related protein
sb;double-strand break
dscam
dscr;down syndrome critical region
dstn
DTNBP
dym;dynamin
dyrk
eat
ebi2
ebna
ecat
eef
ef-p
egfr;epiermal-growth-factor receptor
egr
eif;eukaryotic translation initiation factor
eif4e2;
elf;early flowering
elk
elmo1
enpp
epcam;Epithelial cell adhesion molecular
epo;erythropoietin
epor
EPS8
ER;enoplasmic reticulum
eras
ERBB;e receptor
erg
erf;ethylene-response-factor
erk-map kinase;extracellular signal-regulated kinase-mitogen-activate protein kinase
erman;er mannosidase
ESR;
essrb
etv
eut
eutk
eutl
eutm
eutn
euts
evi
ews
ewsr1
exd;extradenticle
exph
eya;eyes absent
faah;fatty acid amide hydrolase
FABP;fatty acid binding protein
fadd;fas-associated death domain protein
FAC
FAM
fap
far
FBF1
fbxl;;F-box and leucine-rich repeat proein
fbxw;F-box an WD repear omainc
fcer
fcgr3a
fe
fgf ;fibroblast growth factor
fgfrdito receptor
FH;umarate hydrasate
fhbp;factor h binding protein
FISH; fluorescent in situ hybridization
fkh2
flc
flg
FLI
flj
flt
FMRP;fragile x mental retardation protein
fos
fosb
foxo
foxp;forkhead box p
fras;fraser syndrome
frem;fras1-related extracellular matrix protein
frp;frizzled-related protein
frzb
fto
ftsa
ftsaz
ftsh
ftsz
fus
fut4
fyn
gaba;y-aminobutyric acid
GABR
gab1
gab2
GAP;GTPase-activating protein
garz;gartenzwerg
gasp3
gbd'gtpase-binding domain
gca
gch;gtp cyclohydrolase
gcn;general control nonderepressible
gdf
gdnf
gdp;glyceraldehyde-phosphate dehydrogenase
gef;guanine nucleotide exchange factor
get
gga;Golgi-associated,gamma aapin ear-containing-arf
gigantea
git1
gja
gjb
gjc
gli
gln
glr
glrx
glu
glur;glutamate receptor
glut;glucose transporter
gly
glyr;glycine receptor
gm
gmp;guanosine monophosphate
gnas
gna13
gnbp;gram-negative-bacteria-biningprotein
gnpda
got;glutamate oxaloacetate transaminase
gp;g-protein?
GPCR;G-protein-coupled receptor
gpr; G-ptotein-coupled receptors
gpsn
gr;glucocorticoid receptor
grap
grasp
grb2
gria
GRIN
grinl1b
grk2;G protein-coupled receptor kinase 2
grm
grs
gsc;Glut4 sorage compartmnt
gsk;Glyvocogen synthase kinase
gsk3b
gsn
gstt;glutathione S-transferase theta
gtf2i
gtp;guanine nucleotide-binding protein
hac
hac1p
har;human accelerated region
hat;histone acetyl transferase
hb
hba
hbb
HCT;
HDAC;histone deacetylase
hds;homology-directed repair
hek;human embryonic kidney
hes
hh
hif;hypoxia-inducible factor
hipi
his
hist
hjurp
hk;hexokinase
hla;human leukocyte antigen
hla-dp
hnf
hnrnp-a
hox;homeobox
hoxd
HP
hprt;hypoxanthineguanine phosphoribosyltransferase
hr;;histamine receptor
hras
hrd
hsf
hsp;heat shock protein?
hstn;histatherin
hth;homothorax
htr;5-hydroxytryptamine receptor
HTT;human huntingtin gene
HUVECs;human umbilical vein endothelial cells
hyb
hyl
h2ax
h*k
ian*l
IDE;Insulin-degrading enzymes
idh1;isocitrate dehydrogenases
idi;isopentenyl-diphosphatate elta isomerase
ifdr
ife
ifih;intereron induced with helicase c domain
ofit
IFN;Interferon regulatory factor
ifng
ig;immunoglobulin
igfbp
ihh;indian hedgehog
ikka
ikki
ikkn
ile
ilk;integrin-linked kinase
IL1B;interleukin
inpp4a
INPP5D
ins
insp;inositol-*trisphosphate
INSR
ipk
irak;Interleukin-1 receptor-associate kinase
irap;insulin-regulate amino peptidase
ire
ires;internal ribosome entry site
irgm
irs1;insulin receptor substrate
islet
islr
ispa
itgb
jak
jhdm
jmjd
jnk ; kinase?
jun
kap
kcnh
kcnj11;potassium inwardly rectiying channel j11 gene
kcnq
kctd
kdm
kdm*a
kdr
kid
kif1a
kit
KITLG
kix
klf
klrg
kn
kndg1
krab;krippel-assocaited box
kras
krs
krt;keratin?
ksr
ksrp;KH-type splicing regulatory protein
kv
lac
lacz
lag
lamp;lysome-associated membrane protein
lbd;ligand binding domain
lbp
lcad
lck
lcp
lct;lactose
ld;linkage disequilibrium
ldh;lactate dehyrogenase
ldlr;low-density lipopretein receptor
leap
lefty
leu
lgc;ligand-gated chloride channels?
lgr
lhx
lhy;late elongated hypocotyl
lif;leukemia inhibiting factor
lilra;leukocyte immunoglobulin-like receptor
limk
LINE2long-interspersed-nuclear element
lingo
lis1
lkb
lmaf
lman
lmna
lncap
loxp
lpa;lysophosphatidic acid
lrim
lrp1
lrr;leucin-rich repeat
lsd
LTR;Long terminnal repeats
ly6e
lyg
lyn
lys
mad;mitotic arrest-deficint
maf
mafb
mafg
magfea
mal
malp
maoa
maob
map;mitogen-active protein?
mapk;MAP kinase? /mitogen-actived protein?
mapt
map2k7
mash
math
matk
MB;megabase
MC1R;melanocrotin-1 receptor
mcad
mcf
mck; muscle creatine kinase
mcl
mco;multicopper oxidase protein
mcp;monocyte chemotactic protein
mcph
mct
md;myeloid diferentation
mda;melanoma diferentiation-associated protein
mdc;meiator of dna damage checkpoint protein
mdh;malate ehydrogenase
mdm
mdy
me;malic enzyme
mecp
mek
mest
met
mfs;major facilitator superfamily
mglu;metabotropic glutaminate
mgst
mhc;major histocompatility comples
midas;metal ion-dependent adhesion site
mipol
MIR;mammalian-wide interspersed repeat
mite;minature inverted repeated transposable element
mitf
mlc;myosin light chain
mlh
mll;mixed-lineage leukaemia
mmp
mpk;MAP kinase
mras
mre
mrn;mre11/rad50/nbs1
msh
msk2
msp;merozoitic
mst1r
msx
mthf;methyl-tetrahydrofolate
MTHFR
mtnr;melatonin receptor
mtor;mammalian target of rapamycin
mybp;myosin binding protein
myc
mycn
myd
myg;myogenin
myh9
nAChR
nad;nicotinamide adenine dinucleotide
nadp;as above+phosphate
nae;nedd8-activating enzyme
nailc
nampt;nicotinamie phosphori
nanog
nat;n-acetyltransferase
nbfp;neuroblastoma break-point family
nbs;nucleotide binding site
nbs-lrr
nck1
ncoa
nedd9
negr
nek;nerer-in-mitosis A-related kinase
neto
nf2;nuclear factor?
nfkbiz
nhej;nonhomologous end joining
nhe9
nicd;notch intracellular omain
nih*t
NIMA;never-in-mitosis A
nkx
nlgn4
nmda ;N-methyl-d-asparttate
nod
notch
npm1
nppa
nppb
nptx
npyb;neoropeptide y receptor
nras
nrf;nuclear respiractory factor
nrp;nuclear rna polymerase
nrxn1;neurexin
nss;neurotransmitter;sodium symporter
nth;N-terminal helix
ntl;no tail
ntp;nicleoside triphosphate
ntrk
NUMBL
nur
oar;octopamine
oasis
OCA
oct
ol3a3
oli
olig
orc;origin recognition complex protein
osd;omission o secon ivision
ost
ot
pad;proteins associated with differention/peptidylarginine deiminase
pag
pak;p21-activated kinase
pak1
palb
park
pax
pbef
pcdh;protocadherin
pcf
pcg;polycomb group
pclkc
PCR;polymerase chain reaction
pd;programmed death
pdeb;phosphodiesterase
pdgf;platelet-derived growth factor
pdgfra
pdgfrb
pdpk1
pdr
pdx
pdz
pecam1
pep;perpetual flowering
per;period
pfk;phosphofructokinase
pg;piggybac
pgk;phosphoglycerate kinase
pgr
pgs
ph;pleckstrin homology
pha
phactr
phd;proylylhydroxylases
phe
phox2b
phyl;phyllop
pi
PI3K;phosphoinositide 3-kinase
pias2
pik3ca
pik3r1;phosphatidylinositol-3-oh kinase regulatory subunit
PIRNA
pitpnm
pkcv
pkr;protein kinase r
pla
plcg2
plk;pelle-like kinase?
plp
PLXNA
pms2
pnr;pannier
poli;polymerase iota
pot
pp;protein phosphatases
ppara;peroxine-prolierator-activated recepor a
pparg;peroxine-prolierator-activated receptor-y-gene
ppck;phosphoeenolpyruvate carboxylase kinase
ppdk;pyruvate orthophosphate dikinase
ppp*r;protein phospharase* regulator(inhibito) subunity
ppr
ppre;ppar responsive element
pr;progesterone receptor
prc;polycomb repressive complex
prdm
pre
PREF;preadipocyte factor
prickle
prkca
prkcd
prox
prp;plasticity-related proteins
prr;pseudo-responce regulator
psd
psors
ptb
ptch
ptd;phosphotyrosine-binding
pten;phosphatase and tensin holologue
ptex;plasmodium translocon od exported proteins
pthr
pth*r
ptk2B
ptpn;protein tyrosine pgosphatase-n
ptprd
ptprk
ptprt
puma
pxn;paxillin
pyl
pyr;pyrabactin resistance
p4hb;prolyl 4-hydroxylase
qsh
rab
rac
rad
raf
rage
rai1
rapgef
rara;retinoic acid reeceptor alpha
ras
rasa1
ras-grf
rassf1
rb
rbd;rac-binding omain
rbl;reticuloctyce-binding-like
rbpms
rc
rc*h
rdr;RNA-depenent RNA polymerase
rem1
ret
rex
rfv
rgs
rheb
risc;sirna-induced silencing complex
RKO
rnaset
rnd;resistance nodulation cell division
rnf5
rny
ror
rosa
RP
rpa
rps
rrt
rscS
rsks
rspo;R-spondin
rsy
rtk;receptor tyrosine kinase
rtt
rtta;reverse tetracycline transactivator
runx*t
rwpe
rxr
ryr;ryanodine receptor
saa
sae
sb;sleeping beauty
SCAP;SREBP cleavage acivating potein
SCARB2;scavenger receptor B2
scf;skp1/cullin/f-box protein
schb
scr;sex combs reduced
sdh;succinate dehydrogenase
sdt
secy
sema;semaphorin
ser;serine?
serpinb
sgms;sphingomyelin synthase
sgk;srum/glucocorticoid-regulated kinase
sh;src homology
shank3
shc1
shd
shh
shpk;sphingosine kinase
sh*b
sh*pxd*
sh-st*y
sic
sif;stumpy induction factor
sik;salt-inducible kinase
sine;short interspersed nuclear element
sir;silencing information reglator
siRNA;short interfering RNA
sirt
six
sk;snorkel
skn
sk2b1
SLAM;signalling lymphocyte activation molecule
SLC
slc1a3
slc2a1
slc9a3r2
slit
smad
smaf
smi
smn;survival motor neuron
smo;smoohtened
smt
smg
snca
sndstaphylococcal nuclease and tudor domain
snorkel
SnoRNA;small repeat nucleolar RNA
snrk;snf-related kinase
snrpn
sod;superoxide dismutase
sol
sorl1
SOS;son of sevenless
sox
sp1
spaw
spg;spartin?
sphk;sphingosine kinase?
spn;snurportin
spock
spr
spry;sprouty
src
SREBP;sterol regulatory element binding-protein
srf;serum responce factor
ssm
ssp;suspensor allele
ssr;simple sequence repeat
stat3;signal transducers and activators of transcription
stella
stk;src tyrosine kinase?
strn
suc
sur
sxc;super sex combs
syk
syn;synapsin
synj2bp
syx;syntaxin
s1p;sphingosine-1-phosphate
tacr
tacstd
Taftipsi
tagln
tarbp
tarp;transmembrane AMPA-receptor regulatory protein
tau
tb
tbs;TCP-binding site
tbx1
tcf7l2;trancription factor 7 like 2 gene
tchh
tchhl
tcp
tcr;T-cell antigen-binding receptor
tdp;threonine dehydrogenase
tdp
tec
terra;telomere-repeat-encoded rna
tert
tes
tet
tgn;trans-golgi network
tgr;transforming growth factor
tgfbr1
thap
thp
thr
thyx
ticam
tip
TLR;toll-like receptors
tmem
tmprss;transmembrane serine protease
tmprss2-erg
tnf
toc;timing of cad expression
tor;target of rapamycin
TP;tumour protein
TPCN ;tw0-pore segment channel 2
TPH;tryptophan hydroxylase
tpr;tetratricopeptide repeat
fraf
trax;translin-associated factor x
trem
trif
trim
trp
trx;trithorax
try;trypsinogen
tsc
tsh;teashirt
tsix
ttp;tristetraprolin
tuba3
tubg1
txnd;thioredoxin domain
tymp;thymidine phosphorylase
TYR; tyrosinase
TYRP; tyrosinase-related protein
uba
ubc
ubch
ube21
ube3a
ubx;ultrabithorax
UCP;uncoupling protein
ulbp
ump;uridine monophosphate
unc
upr;unfolded protein responce
usp
utr;untranslaed region
uvrag
utx
vac
val
vamp;vesicle-associate membrane protein
vasa
vav
vcap
vdr;vitamin D receptor
VEGF;vascular endothelial growth factor
vesl
vhl
vif
vimi;variant in methylation
vlcad
vldl
vlr;variable lymphocyte receptors
vmat;vesicular monoamine transporter
vrs
vsg;variant surface glycoprotein
vsig
vtc;vacuolar transporter complex
vtc*p
waxy
vps
vsx
WGS;whole-genome shotgun
wtx
wwp
xbp
xist
y
yar
ycca
yda
yhb
yjm
yoda
ypf;yellow fluorescent protein
yqid
y81g3a
zap-70;Zeta-chain-associated protein kinase 70
zc*h**a
zdhhc
zf
zfhx
zfn;zinc finger nuclease
zfp
zic
zif
zmppck
znf
zranb

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